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Bioinformatics Tools: Gene Regulation

This guide contains a curated set of resources and tools that will help you with your research data analysis. It also includes those medical library workshops available at Yale University on many of these bioinformatics tools.


The Encyclopedia Of DNA Elements ENCODE is a project that attemps to identify/ annotate all functional elements in the human genome sequence.

Tools for Gene Regulation Analysis

Knowledge Library (TRANSFAC) - a collection of gene-regulation and protein oriented scientific databases created from the peer-reviewed scientific literature. The TRANSFAC®, and PROTEOME™ products are included in BIOBASE.

The Database of Transcriptional Start Sites (DBTSS) represents exact positions of transcriptional start sites (TSSs) in the genome based on our unique experimentally validated TSS sequencing method, TSS Seq.